PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34946.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 291aa    MW: 34045.8 Da    PI: 9.8806
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34946.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.21.7e-1543136190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 kfY+ YA  +GF+ r+ ++++  r+g+   +  vC++eg+ e++k++       +   r+++ +r+gC+a+++   + +g+  v+ +++ HnHel+
  Dca34946.1  43 KFYKIYALACGFTSRRWSTSHW-RDGTLQFKLVVCNREGFWESKKQRkakeegCVGDGRKNKLHRIGCRARIRFLVK-NGVISVDVFNEFHNHELV 136
                 6**************9998887.888899***********99998884444444444559**************998.****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1243136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKRNAGVNGV EEQFGPHDFC TRLEKEFTPF VGQVFDDLET GIKFYKIYAL ACGFTSRRWS  60
TSHWRDGTLQ FKLVVCNREG FWESKKQRKA KEEGCVGDGR KNKLHRIGCR ARIRFLVKNG  120
VISVDVFNEF HNHELVSPEH RQFQKMARHL TKYHKRLILA NSRLNIGATK TFRMYKELVD  180
GFENVGATLN DFKNFKRDVN CFIHDRDGQL FVDHLLNLKE TRPGFYFDYD VDSKGRLRRV  240
IWADDYARKS YAIFGDGLAF DPTYSTNKYS MVFTPLTGVD NHRNLLHLVV H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-26FAR1-related sequence 5